Variant report

Variant	rs16884125
Chromosome Location	chr4:30821987-30821988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:133970057..133970557-chr4:30821917..30822646,2	HCT-116	colon:
2	chr4:30821360..30824099-chr4:30824392..30825995,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10003247	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10003467	0.88[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs1021263	0.81[CEU][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1032174	0.84[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs1047012	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs10517215	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1374653	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1374656	0.91[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1447361	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1447363	0.84[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1447366	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1447367	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1447369	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1447374	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16867968	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16884045	0.83[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2121657	0.81[ASN][1000 genomes]
rs2166716	0.83[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2166717	0.84[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2310224	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28587843	0.85[ASN][1000 genomes]
rs35154721	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35977739	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3756025	0.87[JPT][hapmap]
rs3775330	0.87[JPT][hapmap]
rs3775332	0.89[JPT][hapmap]
rs6448722	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6820105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6820251	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73119613	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73121566	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73121588	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs977931	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv499039	chr4:30819213-30830142	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30795800-30824000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:30817600-30824000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:30818000-30823000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:30818600-30823600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:30820400-30824600	Weak transcription	Aorta	Aorta
7	chr4:30820800-30823400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:30821000-30823000	Weak transcription	Ovary	ovary
9	chr4:30821200-30823200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:30821400-30823000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:30821600-30822800	Weak transcription	Fetal Heart	heart
12	chr4:30821600-30823200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:30821600-30823200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:30821800-30823400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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