Variant report

Variant	rs1374656
Chromosome Location	chr4:30837194-30837195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10003247	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10003467	0.81[CHB][hapmap];0.86[TSI][hapmap]
rs1032174	1.00[ASW][hapmap];0.81[CHB][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs1047012	0.85[LWK][hapmap]
rs10517215	0.91[CEU][hapmap];0.81[CHB][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12643430	1.00[ASW][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap]
rs13102223	1.00[ASW][hapmap]
rs1374653	0.91[CEU][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1447363	0.81[CHB][hapmap]
rs1447366	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1447367	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1447369	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447374	0.81[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16884045	0.85[CHB][hapmap]
rs16884125	0.91[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2166716	0.84[CHB][hapmap]
rs2166717	0.81[CHB][hapmap]
rs2310224	0.91[CEU][hapmap];0.82[CHB][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35154721	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4359861	1.00[ASW][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap]
rs4692482	0.83[CHD][hapmap]
rs4692486	1.00[ASW][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap]
rs6820105	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6820251	0.91[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73121566	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73121588	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30830200-30838400	Weak transcription	Fetal Stomach	stomach
2	chr4:30830600-30837800	Weak transcription	NH-A	brain
3	chr4:30830800-30838400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:30833400-30842800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:30834600-30838000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:30834800-30838600	Enhancers	Fetal Heart	heart
7	chr4:30835200-30838400	Weak transcription	Left Ventricle	heart
8	chr4:30835200-30842800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:30835400-30838400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:30835800-30837200	Enhancers	Aorta	Aorta
11	chr4:30836200-30837200	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:30836400-30838600	Weak transcription	Fetal Lung	lung
13	chr4:30836600-30837400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:30836600-30842400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr4:30836800-30837200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:30836800-30837200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:30836800-30837200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:30836800-30837400	Enhancers	Fetal Muscle Leg	muscle
19	chr4:30836800-30837400	Enhancers	Right Ventricle	heart
20	chr4:30837000-30837200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr4:30837000-30837200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr4:30837000-30837400	Enhancers	Stomach Smooth Muscle	stomach
23	chr4:30837000-30838400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:30837000-30839400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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