Variant report

Variant	rs1047012
Chromosome Location	chr4:30725696-30725697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10003247	0.80[ASN][1000 genomes]
rs10003467	0.94[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1021263	0.81[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs1032174	0.94[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10517215	0.94[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs1374653	0.88[CHB][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap]
rs1374656	0.85[LWK][hapmap]
rs1447361	0.85[ASN][1000 genomes]
rs1447363	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs1447374	0.88[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs16867968	0.85[ASN][1000 genomes]
rs16884045	0.93[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs16884125	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs2121657	0.87[ASN][1000 genomes]
rs2166716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2166717	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs2310224	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs28587843	0.85[ASN][1000 genomes]
rs34659374	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35977739	0.85[ASN][1000 genomes]
rs3756025	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775330	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775332	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775333	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58200645	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60684999	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61796161	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61796164	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6448722	0.85[ASN][1000 genomes]
rs6820251	0.88[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs73117597	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73119613	0.85[ASN][1000 genomes]
rs73121566	0.83[ASN][1000 genomes]
rs73121588	0.83[ASN][1000 genomes]
rs9291546	0.89[GIH][hapmap];0.92[MEX][hapmap]
rs977931	0.90[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30717800-30726600	Active TSS	Brain Anterior Caudate	brain
2	chr4:30717800-30728200	Active TSS	Brain Angular Gyrus	brain
3	chr4:30717800-30728200	Active TSS	Colon Smooth Muscle	Colon
4	chr4:30717800-30728400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:30718000-30726200	Active TSS	Left Ventricle	heart
6	chr4:30718000-30726600	Active TSS	Brain Cingulate Gyrus	brain
7	chr4:30719000-30729600	Active TSS	Fetal Heart	heart
8	chr4:30723200-30729800	Flanking Active TSS	HUVEC	blood vessel
9	chr4:30723600-30726200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
10	chr4:30723800-30726200	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:30724000-30726200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:30724000-30726200	Transcr. at gene 5' and 3'	NHEK	skin
13	chr4:30724200-30726200	Transcr. at gene 5' and 3'	Aorta	Aorta
14	chr4:30724400-30726000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:30724600-30726200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:30724600-30726200	Flanking Active TSS	Fetal Brain Female	brain
17	chr4:30724600-30726200	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
18	chr4:30724600-30726200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
19	chr4:30724600-30729400	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr4:30724800-30725800	Active TSS	Colonic Mucosa	Colon
21	chr4:30724800-30725800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
22	chr4:30724800-30726000	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
23	chr4:30724800-30726200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:30724800-30726200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
25	chr4:30724800-30726200	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
26	chr4:30724800-30726200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
27	chr4:30724800-30726200	Active TSS	NHDF-Ad	bronchial
28	chr4:30724800-30726400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
29	chr4:30724800-30726600	Active TSS	Muscle Satellite Cultured Cells	--
30	chr4:30724800-30729200	Active TSS	Right Ventricle	heart
31	chr4:30725000-30726000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
32	chr4:30725000-30726000	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:30725000-30726200	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
34	chr4:30725000-30726400	Active TSS	Brain Hippocampus Middle	brain
35	chr4:30725000-30726400	Active TSS	Ovary	ovary
36	chr4:30725200-30725800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:30725200-30726000	Transcr. at gene 5' and 3'	ES-UCSF4 Cell Line	embryonic stem cell
38	chr4:30725200-30726000	Flanking Active TSS	NH-A	brain
39	chr4:30725200-30726200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
40	chr4:30725200-30726200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr4:30725200-30726200	Flanking Active TSS	HMEC	breast
42	chr4:30725200-30727000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:30725200-30728000	Active TSS	NHLF	lung
44	chr4:30725200-30729400	Active TSS	Stomach Smooth Muscle	stomach
45	chr4:30725400-30725800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr4:30725400-30726000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
47	chr4:30725400-30726200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
48	chr4:30725400-30726200	Flanking Active TSS	Fetal Brain Male	brain
49	chr4:30725400-30726200	Transcr. at gene 5' and 3'	Fetal Lung	lung
50	chr4:30725400-30727000	Enhancers	Cortex derived primary cultured neurospheres	brain

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