Variant report

Variant	rs3775333
Chromosome Location	chr4:30729417-30729418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10003247	0.82[ASN][1000 genomes]
rs10003467	0.87[ASN][1000 genomes]
rs1021263	0.89[ASN][1000 genomes]
rs1032174	0.89[ASN][1000 genomes]
rs1047012	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10517215	0.85[ASN][1000 genomes]
rs1374653	0.80[ASN][1000 genomes]
rs1447361	0.87[ASN][1000 genomes]
rs1447363	0.87[ASN][1000 genomes]
rs1447366	0.81[ASN][1000 genomes]
rs16867968	0.87[ASN][1000 genomes]
rs16884045	0.87[ASN][1000 genomes]
rs2121657	0.89[ASN][1000 genomes]
rs2166716	0.89[ASN][1000 genomes]
rs2166717	0.87[ASN][1000 genomes]
rs28587843	0.87[ASN][1000 genomes]
rs34659374	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35154721	0.80[ASN][1000 genomes]
rs35977739	0.87[ASN][1000 genomes]
rs3756025	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775330	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775332	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58200645	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60684999	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61796161	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61796164	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6448722	0.87[ASN][1000 genomes]
rs71190457	0.81[ASN][1000 genomes]
rs73117597	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73119613	0.86[ASN][1000 genomes]
rs73121566	0.85[ASN][1000 genomes]
rs73121588	0.85[ASN][1000 genomes]
rs977931	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30719000-30729600	Active TSS	Fetal Heart	heart
2	chr4:30723200-30729800	Flanking Active TSS	HUVEC	blood vessel
3	chr4:30726200-30730000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:30726200-30732400	Weak transcription	Left Ventricle	heart
5	chr4:30726200-30738600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:30726800-30740800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:30727400-30736400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:30728200-30730400	Weak transcription	Fetal Brain Female	brain
10	chr4:30728200-30730800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:30728200-30745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:30728400-30730000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:30728400-30733400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:30728400-30736000	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:30728400-30746200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:30728600-30743000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:30729000-30748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr4:30729200-30732000	Weak transcription	Aorta	Aorta
19	chr4:30729200-30736400	Weak transcription	Fetal Stomach	stomach
20	chr4:30729200-30741600	Weak transcription	Colon Smooth Muscle	Colon
21	chr4:30729200-30746200	Weak transcription	NH-A	brain
22	chr4:30729400-30729600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:30729400-30730000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:30729400-30730000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:30729400-30730800	Enhancers	Hela-S3	cervix
26	chr4:30729400-30731000	Enhancers	NHEK	skin
27	chr4:30729400-30733200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:30729400-30736400	Weak transcription	Fetal Lung	lung
29	chr4:30729400-30736400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr4:30729400-30740200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:30729400-30741600	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links