Variant report

Variant	rs16884045
Chromosome Location	chr4:30753211-30753212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10003247	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10003467	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1021263	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1032174	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1047012	0.93[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs10517215	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1374653	0.83[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs1374656	0.85[CHB][hapmap]
rs1447361	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447363	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447366	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1447374	0.93[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16867968	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884125	0.83[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2121657	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2166716	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2166717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2310224	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28587843	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34659374	0.86[ASN][1000 genomes]
rs35154721	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35977739	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756025	0.87[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs3775330	0.87[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs3775332	0.87[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs3775333	0.87[ASN][1000 genomes]
rs58200645	0.83[ASN][1000 genomes]
rs60684999	0.91[ASN][1000 genomes]
rs61796161	0.90[ASN][1000 genomes]
rs61796164	0.89[ASN][1000 genomes]
rs6448722	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820105	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6820251	0.83[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73117597	0.83[ASN][1000 genomes]
rs73119613	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73121566	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73121588	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs977931	0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:30730200-30754800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:30737400-30770800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:30739400-30765000	Weak transcription	Fetal Lung	lung
5	chr4:30746400-30761800	Weak transcription	Left Ventricle	heart
6	chr4:30746400-30767000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:30746600-30754800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:30746800-30754600	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:30747400-30753600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:30747400-30755000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:30748200-30754800	Weak transcription	NHLF	lung
12	chr4:30748400-30754600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:30748800-30761000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:30750000-30754400	Weak transcription	Fetal Heart	heart
15	chr4:30750400-30754800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:30752400-30758400	Weak transcription	Aorta	Aorta

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