Variant report

Variant	rs3756025
Chromosome Location	chr4:30732274-30732275
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10003467	0.88[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1021263	0.81[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs1032174	0.88[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1047012	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10517215	0.88[CHB][hapmap];0.82[GIH][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs1374653	0.94[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1447361	0.83[ASN][1000 genomes]
rs1447363	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1447366	0.84[ASN][1000 genomes]
rs1447374	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs16867968	0.83[ASN][1000 genomes]
rs16884045	0.87[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs16884125	0.87[JPT][hapmap]
rs2121657	0.84[ASN][1000 genomes]
rs2166716	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2166717	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2310224	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs28587843	0.83[ASN][1000 genomes]
rs34659374	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35154721	0.85[ASN][1000 genomes]
rs35977739	0.83[ASN][1000 genomes]
rs3775330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775333	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58200645	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60684999	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61796161	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61796164	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6448722	0.83[ASN][1000 genomes]
rs6820251	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs73117597	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73119613	0.82[ASN][1000 genomes]
rs73121566	0.80[ASN][1000 genomes]
rs73121588	0.80[ASN][1000 genomes]
rs9291546	0.92[GIH][hapmap];0.93[MEX][hapmap]
rs977931	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30726200-30732400	Weak transcription	Left Ventricle	heart
2	chr4:30726200-30738600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:30726800-30740800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:30727400-30736400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:30728200-30745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:30728400-30733400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:30728400-30736000	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:30728400-30746200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:30728600-30743000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:30729000-30748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:30729200-30736400	Weak transcription	Fetal Stomach	stomach
13	chr4:30729200-30741600	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:30729200-30746200	Weak transcription	NH-A	brain
15	chr4:30729400-30733200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:30729400-30736400	Weak transcription	Fetal Lung	lung
17	chr4:30729400-30736400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:30729400-30740200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:30729400-30741600	Weak transcription	Brain Anterior Caudate	brain
20	chr4:30730200-30754800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:30730600-30734000	Weak transcription	Fetal Heart	heart
22	chr4:30730800-30733600	Weak transcription	Hela-S3	cervix
23	chr4:30730800-30736200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:30732000-30732600	Active TSS	Aorta	Aorta
25	chr4:30732000-30737600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:30732200-30732600	Enhancers	NHEK	skin
27	chr4:30732200-30734200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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