Variant report

Variant	rs35154721
Chromosome Location	chr4:30790505-30790506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10003247	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10003467	0.90[ASN][1000 genomes]
rs1021263	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1032174	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10517215	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1374653	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374656	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1447361	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1447363	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1447366	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1447367	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1447369	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1447374	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16867968	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16884045	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16884125	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2121657	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2166716	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2166717	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2310224	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28587843	0.90[ASN][1000 genomes]
rs34659374	0.81[ASN][1000 genomes]
rs35977739	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3756025	0.85[ASN][1000 genomes]
rs3775330	0.84[ASN][1000 genomes]
rs3775332	0.85[ASN][1000 genomes]
rs3775333	0.80[ASN][1000 genomes]
rs58200645	0.85[ASN][1000 genomes]
rs60684999	0.81[ASN][1000 genomes]
rs61796161	0.80[ASN][1000 genomes]
rs61796164	0.81[ASN][1000 genomes]
rs6448722	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6820105	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6820251	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73117597	0.85[ASN][1000 genomes]
rs73119613	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73121566	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73121588	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs977931	0.84[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30779200-30790600	Weak transcription	Fetal Lung	lung
2	chr4:30784600-30790600	Weak transcription	Aorta	Aorta
3	chr4:30785400-30790800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:30785600-30790800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:30785800-30790600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:30786000-30790600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:30786000-30790800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:30788000-30790600	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:30788200-30790800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:30788200-30791000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:30788400-30790800	Weak transcription	Ovary	ovary
12	chr4:30788400-30791200	Weak transcription	Fetal Stomach	stomach
13	chr4:30788600-30790600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:30789800-30791200	Enhancers	Fetal Heart	heart
15	chr4:30790200-30791200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:30790200-30792200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:30790400-30790800	Enhancers	Fetal Intestine Small	intestine
18	chr4:30790400-30791000	Enhancers	Fetal Intestine Large	intestine
19	chr4:30790400-30791400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr4:30790400-30791600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr4:30790400-30792200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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