Variant report

Variant	rs1447374
Chromosome Location	chr4:30824964-30824965
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:30821360..30824099-chr4:30824392..30825995,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10003247	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10003467	0.94[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs1021263	0.86[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1032174	0.94[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs1047012	0.88[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs10517215	0.91[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1374653	0.91[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1374656	0.81[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1447361	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1447363	0.94[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1447366	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1447367	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1447369	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16867968	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16884045	0.93[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16884125	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121657	0.81[ASN][1000 genomes]
rs2166716	0.93[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2166717	0.94[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2310224	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28587843	0.85[ASN][1000 genomes]
rs35154721	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35977739	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3756025	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs3775330	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs3775332	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs6448722	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6820105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6820251	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73119613	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73121566	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73121588	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs977931	0.82[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv499039	chr4:30819213-30830142	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:30823000-30825000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:30823200-30825200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:30823800-30826600	Weak transcription	HUVEC	blood vessel
5	chr4:30823800-30827000	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:30824000-30825000	Weak transcription	Right Ventricle	heart
7	chr4:30824200-30825200	Enhancers	Hela-S3	cervix
8	chr4:30824200-30826200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:30824200-30826400	Weak transcription	NH-A	brain
10	chr4:30824200-30826800	Weak transcription	HSMM	muscle
11	chr4:30824400-30825200	Flanking Active TSS	Fetal Heart	heart
12	chr4:30824600-30825200	Enhancers	Aorta	Aorta
13	chr4:30824600-30825200	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr4:30824800-30825000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:30824800-30825000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:30824800-30826400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links