Variant report

Variant	rs35428738
Chromosome Location	chr4:30755382-30755383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10006361	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10008728	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10021424	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10024115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1032175	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1032176	0.88[EUR][1000 genomes]
rs10517219	0.82[ASN][1000 genomes]
rs10939312	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11727285	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13104581	0.88[EUR][1000 genomes]
rs13111136	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13121800	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13122380	0.85[EUR][1000 genomes]
rs1348921	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1447360	0.84[ASN][1000 genomes]
rs1447364	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1486787	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2121658	0.84[EUR][1000 genomes]
rs28420079	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28716204	0.91[ASN][1000 genomes]
rs3775331	0.89[EUR][1000 genomes]
rs4235010	0.88[ASN][1000 genomes]
rs4368569	0.88[ASN][1000 genomes]
rs4380480	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4466008	0.87[ASN][1000 genomes]
rs4498103	0.88[ASN][1000 genomes]
rs4504214	0.82[ASN][1000 genomes]
rs4505780	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4557224	0.89[ASN][1000 genomes]
rs4611883	0.88[ASN][1000 genomes]
rs4613528	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4615135	0.88[ASN][1000 genomes]
rs4995324	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6448719	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6448720	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6448723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6814666	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6815007	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6827723	0.88[ASN][1000 genomes]
rs6828872	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6832173	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6855232	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6855570	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6856144	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6858230	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7654583	0.82[ASN][1000 genomes]
rs7664926	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7670155	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7685283	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7685566	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7695188	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7695488	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9291547	0.85[EUR][1000 genomes]
rs9291548	0.90[EUR][1000 genomes]
rs9291549	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9291553	0.87[ASN][1000 genomes]
rs9999290	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:30737400-30770800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:30739400-30765000	Weak transcription	Fetal Lung	lung
4	chr4:30746400-30761800	Weak transcription	Left Ventricle	heart
5	chr4:30746400-30767000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:30748800-30761000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:30752400-30758400	Weak transcription	Aorta	Aorta
8	chr4:30753600-30756600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:30753600-30758400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:30754000-30756600	Weak transcription	Spleen	Spleen
11	chr4:30754400-30756000	Enhancers	Fetal Heart	heart
12	chr4:30754600-30756000	Enhancers	Hela-S3	cervix
13	chr4:30754600-30757600	Enhancers	NH-A	brain
14	chr4:30754600-30759000	Enhancers	Colon Smooth Muscle	Colon
15	chr4:30754600-30759200	Enhancers	HUVEC	blood vessel
16	chr4:30754600-30760400	Enhancers	HMEC	breast
17	chr4:30754800-30755400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:30754800-30755400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:30754800-30755400	Flanking Active TSS	NHEK	skin
20	chr4:30754800-30755600	Enhancers	Placenta Amnion	Placenta Amnion
21	chr4:30754800-30755800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:30754800-30757400	Enhancers	Rectal Smooth Muscle	rectum
23	chr4:30754800-30760000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr4:30755200-30755800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:30755200-30756200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr4:30755200-30758400	Weak transcription	NHLF	lung

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