Variant report

Variant	rs1447360
Chromosome Location	chr4:30817884-30817885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10006361	0.80[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10008728	0.81[CEU][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10012637	0.85[YRI][hapmap]
rs10013155	0.85[YRI][hapmap]
rs10014165	0.85[YRI][hapmap]
rs10015789	0.81[YRI][hapmap]
rs10021424	0.83[ASN][1000 genomes]
rs10024115	0.85[ASN][1000 genomes]
rs10025381	0.84[YRI][hapmap]
rs10034034	0.85[YRI][hapmap]
rs10517219	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10939312	0.85[ASN][1000 genomes]
rs11727285	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12331633	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs13108018	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1348921	0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1374658	0.81[EUR][1000 genomes]
rs1447364	0.95[YRI][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1447365	0.90[YRI][hapmap]
rs16884130	0.95[YRI][hapmap]
rs28716204	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35428738	0.84[ASN][1000 genomes]
rs4235010	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4368569	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4380480	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4466008	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4498103	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4504214	1.00[CEU][hapmap];0.91[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4505780	0.85[ASN][1000 genomes]
rs4557224	0.85[CEU][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4611883	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4613528	0.85[ASN][1000 genomes]
rs4615135	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4619848	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4995324	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6448723	0.85[ASN][1000 genomes]
rs6812005	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs6815248	0.84[YRI][hapmap]
rs6822350	0.89[EUR][1000 genomes]
rs6827723	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6828872	0.85[ASN][1000 genomes]
rs6832173	0.85[ASN][1000 genomes]
rs6844992	0.93[YRI][hapmap]
rs6855232	0.85[ASN][1000 genomes]
rs6855570	0.85[ASN][1000 genomes]
rs6856144	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6858230	0.85[ASN][1000 genomes]
rs7654583	1.00[CEU][hapmap];0.91[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7664926	0.85[ASN][1000 genomes]
rs7670155	0.85[ASN][1000 genomes]
rs7678055	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7685283	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7692210	0.82[EUR][1000 genomes]
rs7695488	0.85[ASN][1000 genomes]
rs9291549	0.85[ASN][1000 genomes]
rs9291550	0.95[YRI][hapmap]
rs9291553	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9999290	0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30795800-30824000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:30804800-30819400	Weak transcription	Aorta	Aorta
3	chr4:30811400-30819000	Weak transcription	Fetal Heart	heart
4	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:30817200-30818400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:30817600-30818800	Weak transcription	Fetal Lung	lung
7	chr4:30817600-30820400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:30817600-30824000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:30817800-30819800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:30817800-30820200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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