Variant report

Variant	rs16884130
Chromosome Location	chr4:30826203-30826204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10006361	0.90[YRI][hapmap]
rs10010406	1.00[AMR][1000 genomes]
rs10012637	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs10013155	0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10014165	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs10015789	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs10019451	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025381	0.89[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10026764	1.00[AMR][1000 genomes]
rs10026911	0.83[AMR][1000 genomes]
rs10028626	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028966	1.00[AMR][1000 genomes]
rs10034034	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs10939319	1.00[AMR][1000 genomes]
rs1348921	0.90[YRI][hapmap]
rs1447360	0.95[YRI][hapmap]
rs1447364	0.90[YRI][hapmap]
rs1447365	0.85[YRI][hapmap]
rs28363824	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28408956	1.00[AMR][1000 genomes]
rs28441501	0.83[AMR][1000 genomes]
rs28534792	0.83[AMR][1000 genomes]
rs28593247	1.00[AMR][1000 genomes]
rs28650136	0.85[AMR][1000 genomes]
rs28655825	0.83[AMR][1000 genomes]
rs28676746	1.00[AMR][1000 genomes]
rs4498103	0.86[YRI][hapmap]
rs4504214	0.87[YRI][hapmap]
rs4557224	0.86[YRI][hapmap]
rs57816723	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6812478	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6815248	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6823602	1.00[AMR][1000 genomes]
rs6827169	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs6844992	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7654583	0.86[YRI][hapmap]
rs9291550	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9884647	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884648	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9997990	1.00[AMR][1000 genomes]
rs9999290	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv499039	chr4:30819213-30830142	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:30823800-30826600	Weak transcription	HUVEC	blood vessel
3	chr4:30823800-30827000	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:30824200-30826400	Weak transcription	NH-A	brain
5	chr4:30824200-30826800	Weak transcription	HSMM	muscle
6	chr4:30824800-30826400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:30825200-30826400	Enhancers	Fetal Heart	heart
8	chr4:30825200-30826800	Weak transcription	Hela-S3	cervix
9	chr4:30825200-30835800	Weak transcription	Aorta	Aorta
10	chr4:30826200-30826400	Enhancers	Stomach Smooth Muscle	stomach
11	chr4:30826200-30827200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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