Variant report

Variant	rs57816723
Chromosome Location	chr4:30828826-30828827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10010406	1.00[AMR][1000 genomes]
rs10012637	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10013155	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10014165	1.00[AMR][1000 genomes]
rs10015789	1.00[AMR][1000 genomes]
rs10019451	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025381	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10026764	1.00[AMR][1000 genomes]
rs10026911	0.83[AMR][1000 genomes]
rs10028626	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028966	1.00[AMR][1000 genomes]
rs10034034	1.00[AMR][1000 genomes]
rs10939319	1.00[AMR][1000 genomes]
rs16884130	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28363824	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28408956	1.00[AMR][1000 genomes]
rs28441501	0.83[AMR][1000 genomes]
rs28534792	0.83[AMR][1000 genomes]
rs28593247	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28650136	0.85[AMR][1000 genomes]
rs28655825	0.83[AMR][1000 genomes]
rs28676746	1.00[AMR][1000 genomes]
rs6812478	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6815248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6823602	1.00[AMR][1000 genomes]
rs6827169	1.00[AMR][1000 genomes]
rs6844992	1.00[AMR][1000 genomes]
rs9291550	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9884647	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884648	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9997990	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv499039	chr4:30819213-30830142	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:30825200-30835800	Weak transcription	Aorta	Aorta
3	chr4:30826400-30830400	Weak transcription	Fetal Heart	heart
4	chr4:30826800-30829000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:30827200-30829400	Weak transcription	NH-A	brain
6	chr4:30827200-30832000	Weak transcription	HUVEC	blood vessel
7	chr4:30827200-30833400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:30827400-30829600	Weak transcription	HSMM	muscle
9	chr4:30827400-30830400	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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