Variant report

Variant	rs10010406
Chromosome Location	chr4:30865427-30865428
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10012637	1.00[AMR][1000 genomes]
rs10013155	1.00[AMR][1000 genomes]
rs10014165	1.00[AMR][1000 genomes]
rs10015789	1.00[AMR][1000 genomes]
rs10019451	1.00[AMR][1000 genomes]
rs10025381	1.00[AMR][1000 genomes]
rs10026764	1.00[AMR][1000 genomes]
rs10026911	0.83[AMR][1000 genomes]
rs10028626	1.00[AMR][1000 genomes]
rs10028966	1.00[AMR][1000 genomes]
rs10034034	1.00[AMR][1000 genomes]
rs10939319	1.00[AMR][1000 genomes]
rs16884130	1.00[AMR][1000 genomes]
rs28363824	0.85[AMR][1000 genomes]
rs28408956	1.00[AMR][1000 genomes]
rs28441501	0.83[AMR][1000 genomes]
rs28534792	0.83[AMR][1000 genomes]
rs28593247	1.00[AMR][1000 genomes]
rs28650136	0.85[AMR][1000 genomes]
rs28655825	0.83[AMR][1000 genomes]
rs28676746	1.00[AMR][1000 genomes]
rs57816723	1.00[AMR][1000 genomes]
rs6812478	1.00[AMR][1000 genomes]
rs6815248	1.00[AMR][1000 genomes]
rs6823602	1.00[AMR][1000 genomes]
rs6827169	1.00[AMR][1000 genomes]
rs6844992	1.00[AMR][1000 genomes]
rs9291550	0.85[AMR][1000 genomes]
rs9884647	1.00[AMR][1000 genomes]
rs9884648	1.00[AMR][1000 genomes]
rs9997990	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30849200-30872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:30855200-30879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:30855600-30867400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:30856200-30868600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:30857200-30868200	Weak transcription	Aorta	Aorta
6	chr4:30861800-30868000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:30862600-30867400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:30862800-30870600	Enhancers	Colon Smooth Muscle	Colon
9	chr4:30863000-30868800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:30863200-30867800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:30863600-30868600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:30864200-30865600	Enhancers	HUVEC	blood vessel
13	chr4:30864200-30865800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:30864200-30865800	Enhancers	Fetal Lung	lung
15	chr4:30864200-30870000	Enhancers	Rectal Smooth Muscle	rectum
16	chr4:30864400-30866400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:30864400-30868000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:30864600-30865600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:30864600-30865600	Enhancers	HMEC	breast
20	chr4:30864600-30865600	Enhancers	NH-A	brain
21	chr4:30864600-30866200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr4:30864800-30865600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:30864800-30870800	Enhancers	Fetal Heart	heart
24	chr4:30865000-30865600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:30865000-30865600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:30865000-30865600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr4:30865000-30865600	Enhancers	HSMMtube	muscle
28	chr4:30865200-30867400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:30865200-30867400	Weak transcription	Fetal Stomach	stomach
30	chr4:30865200-30867400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:30865200-30868000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr4:30865200-30869200	Weak transcription	Ovary	ovary
33	chr4:30865200-30870400	Weak transcription	Fetal Brain Male	brain
34	chr4:30865200-30872200	Weak transcription	Left Ventricle	heart
35	chr4:30865400-30868200	Weak transcription	NHEK	skin

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