Variant report

Variant	rs10028626
Chromosome Location	chr4:30855594-30855595
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10010406	1.00[AMR][1000 genomes]
rs10012637	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10013155	1.00[AMR][1000 genomes]
rs10014165	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10015789	1.00[AMR][1000 genomes]
rs10019451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025381	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10026764	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10026911	0.83[AMR][1000 genomes]
rs10028966	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034034	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10939319	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884130	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28363824	0.85[AMR][1000 genomes]
rs28408956	1.00[AMR][1000 genomes]
rs28441501	0.83[AMR][1000 genomes]
rs28534792	0.83[AMR][1000 genomes]
rs28593247	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28650136	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28655825	0.83[AMR][1000 genomes]
rs28676746	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57816723	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6812478	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6815248	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6823602	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827169	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6844992	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9291550	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9884647	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884648	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9997990	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30842600-30855800	Weak transcription	Aorta	Aorta
2	chr4:30849200-30872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:30850800-30855800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:30851000-30855800	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:30851000-30857800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:30851600-30855600	Weak transcription	NHLF	lung
7	chr4:30852000-30858800	Weak transcription	Fetal Heart	heart
8	chr4:30854000-30855600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:30854000-30856200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:30854600-30855800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:30854600-30856000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr4:30854600-30856200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:30855000-30855800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr4:30855200-30856000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr4:30855200-30856000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:30855200-30879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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