Variant report

Variant	rs10026764
Chromosome Location	chr4:30904047-30904048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10010406	1.00[AMR][1000 genomes]
rs10012637	1.00[AMR][1000 genomes]
rs10013155	1.00[AMR][1000 genomes]
rs10014165	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10015789	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019451	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025381	1.00[AMR][1000 genomes]
rs10026911	0.83[AMR][1000 genomes]
rs10028626	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028966	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034034	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10939319	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16884130	1.00[AMR][1000 genomes]
rs28363824	0.85[AMR][1000 genomes]
rs28408956	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28441501	0.83[AMR][1000 genomes]
rs28534792	0.83[AMR][1000 genomes]
rs28593247	1.00[AMR][1000 genomes]
rs28650136	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28655825	0.83[AMR][1000 genomes]
rs28676746	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55904258	1.00[ASN][1000 genomes]
rs56988158	1.00[ASN][1000 genomes]
rs57816723	1.00[AMR][1000 genomes]
rs6812478	1.00[AMR][1000 genomes]
rs6815248	1.00[AMR][1000 genomes]
rs6823602	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827169	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6844992	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73117592	1.00[ASN][1000 genomes]
rs9291550	0.85[AMR][1000 genomes]
rs9884647	1.00[AMR][1000 genomes]
rs9884648	1.00[AMR][1000 genomes]
rs9997990	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30901400-30904600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:30903000-30904800	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:30903400-30904600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr4:30903800-30905200	Weak transcription	Fetal Intestine Large	intestine
5	chr4:30903800-30905800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:30904000-30904200	Enhancers	Fetal Intestine Small	intestine
7	chr4:30904000-30904400	Enhancers	Colon Smooth Muscle	Colon
8	chr4:30904000-30904800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:30904000-30906000	Weak transcription	Fetal Lung	lung
10	chr4:30904000-30907600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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