Variant report

Variant	rs6827169
Chromosome Location	chr4:30902422-30902423
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10010406	1.00[AMR][1000 genomes]
rs10012637	0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10013155	1.00[AMR][1000 genomes]
rs10014165	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10015789	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019451	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025381	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs10026764	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10026911	0.83[AMR][1000 genomes]
rs10028626	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028966	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034034	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10939319	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1447365	0.92[YRI][hapmap]
rs16884130	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs28363824	0.85[AMR][1000 genomes]
rs28408956	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28441501	0.83[AMR][1000 genomes]
rs28534792	0.83[AMR][1000 genomes]
rs28593247	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28650136	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28655825	0.83[AMR][1000 genomes]
rs28676746	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55904258	1.00[ASN][1000 genomes]
rs56988158	1.00[ASN][1000 genomes]
rs57816723	1.00[AMR][1000 genomes]
rs6812478	1.00[AMR][1000 genomes]
rs6815248	1.00[AMR][1000 genomes]
rs6823602	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6844992	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73117592	1.00[ASN][1000 genomes]
rs9291550	0.84[YRI][hapmap];0.85[AMR][1000 genomes]
rs9884647	1.00[AMR][1000 genomes]
rs9884648	1.00[AMR][1000 genomes]
rs9997990	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
2	chr4:30891600-30903400	Weak transcription	Fetal Kidney	kidney
3	chr4:30901400-30904600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:30902400-30903400	Enhancers	Fetal Intestine Large	intestine

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