Variant report

Variant	rs28655825
Chromosome Location	chr4:30981676-30981677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10010406	0.83[AMR][1000 genomes]
rs10012637	0.83[AMR][1000 genomes]
rs10013155	0.83[AMR][1000 genomes]
rs10014165	0.83[AMR][1000 genomes]
rs10015789	0.83[AMR][1000 genomes]
rs10019451	0.83[AMR][1000 genomes]
rs10025381	0.83[AMR][1000 genomes]
rs10026764	0.83[AMR][1000 genomes]
rs10026911	1.00[AMR][1000 genomes]
rs10028626	0.83[AMR][1000 genomes]
rs10028966	0.83[AMR][1000 genomes]
rs10034034	0.83[AMR][1000 genomes]
rs10939319	0.83[AMR][1000 genomes]
rs16884130	0.83[AMR][1000 genomes]
rs28408956	0.83[AMR][1000 genomes]
rs28441501	1.00[AMR][1000 genomes]
rs28534792	1.00[AMR][1000 genomes]
rs28593247	0.83[AMR][1000 genomes]
rs28609713	0.83[AMR][1000 genomes]
rs28676746	0.83[AMR][1000 genomes]
rs57816723	0.83[AMR][1000 genomes]
rs6812478	0.83[AMR][1000 genomes]
rs6815248	0.83[AMR][1000 genomes]
rs6823602	0.83[AMR][1000 genomes]
rs6827169	0.83[AMR][1000 genomes]
rs6844992	0.83[AMR][1000 genomes]
rs9884647	0.83[AMR][1000 genomes]
rs9884648	0.83[AMR][1000 genomes]
rs9997990	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv963597	chr4:30980639-30981704	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
2	chr4:30964600-30992600	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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