Variant report

Variant	rs6823602
Chromosome Location	chr4:30883947-30883948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10010406	1.00[AMR][1000 genomes]
rs10012637	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10013155	1.00[AMR][1000 genomes]
rs10014165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10015789	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019451	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025381	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10026764	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10026911	0.83[AMR][1000 genomes]
rs10028626	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034034	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10939319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1447365	0.84[AFR][1000 genomes]
rs16884130	1.00[AMR][1000 genomes]
rs28363824	0.85[AMR][1000 genomes]
rs28408956	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28441501	0.83[AMR][1000 genomes]
rs28459765	0.80[AFR][1000 genomes]
rs28534792	0.83[AMR][1000 genomes]
rs28593247	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28650136	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28655825	0.83[AMR][1000 genomes]
rs28676746	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57816723	1.00[AMR][1000 genomes]
rs6812478	1.00[AMR][1000 genomes]
rs6815248	1.00[AMR][1000 genomes]
rs6827169	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6844992	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9291550	0.85[AMR][1000 genomes]
rs9884647	1.00[AMR][1000 genomes]
rs9884648	1.00[AMR][1000 genomes]
rs9997990	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30868800-30886800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
3	chr4:30877600-30884000	Weak transcription	Fetal Heart	heart
4	chr4:30878000-30885400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:30879800-30893000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:30881800-30886400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:30883200-30899000	Weak transcription	Aorta	Aorta

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