Variant report

Variant	rs13108018
Chromosome Location	chr4:30828614-30828615
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10517219	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12331633	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1374658	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1447360	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28716204	0.83[AMR][1000 genomes]
rs4235010	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4235011	0.80[EUR][1000 genomes]
rs4368569	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4466008	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4493494	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4498103	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4504214	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4527444	0.81[EUR][1000 genomes]
rs4557224	0.80[AMR][1000 genomes]
rs4611883	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4615135	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4619848	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4692105	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6827723	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7434610	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7654583	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7678055	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7692210	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9291553	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv499039	chr4:30819213-30830142	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:30825200-30835800	Weak transcription	Aorta	Aorta
3	chr4:30826400-30830400	Weak transcription	Fetal Heart	heart
4	chr4:30826800-30829000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:30827200-30829400	Weak transcription	NH-A	brain
6	chr4:30827200-30832000	Weak transcription	HUVEC	blood vessel
7	chr4:30827200-30833400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:30827400-30829600	Weak transcription	HSMM	muscle
9	chr4:30827400-30830400	Weak transcription	Hela-S3	cervix

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