Variant report

Variant	rs2121658
Chromosome Location	chr4:30727233-30727234
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10021424	0.82[EUR][1000 genomes]
rs10024115	0.88[CEU][hapmap];0.84[YRI][hapmap];0.83[EUR][1000 genomes]
rs1032175	0.86[EUR][1000 genomes]
rs10939312	0.82[EUR][1000 genomes]
rs13111136	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13121800	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13122380	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1486787	0.88[CEU][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28420079	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35428738	0.84[EUR][1000 genomes]
rs3775331	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4505780	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs4613528	0.84[EUR][1000 genomes]
rs6448719	0.86[EUR][1000 genomes]
rs6448720	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6448723	0.88[CEU][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes]
rs6814666	0.81[EUR][1000 genomes]
rs6815007	0.86[CEU][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6828872	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs6832173	0.84[EUR][1000 genomes]
rs6855232	0.84[EUR][1000 genomes]
rs6855570	0.84[EUR][1000 genomes]
rs6858230	0.82[EUR][1000 genomes]
rs7664926	0.84[EUR][1000 genomes]
rs7670155	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs7685566	0.86[EUR][1000 genomes]
rs7695188	0.88[EUR][1000 genomes]
rs7695488	0.86[CEU][hapmap];0.82[YRI][hapmap];0.84[EUR][1000 genomes]
rs9291547	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs9291549	0.85[CEU][hapmap];0.82[YRI][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30717800-30728200	Active TSS	Brain Angular Gyrus	brain
2	chr4:30717800-30728200	Active TSS	Colon Smooth Muscle	Colon
3	chr4:30717800-30728400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:30719000-30729600	Active TSS	Fetal Heart	heart
5	chr4:30723200-30729800	Flanking Active TSS	HUVEC	blood vessel
6	chr4:30724600-30729400	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr4:30724800-30729200	Active TSS	Right Ventricle	heart
8	chr4:30725200-30728000	Active TSS	NHLF	lung
9	chr4:30725200-30729400	Active TSS	Stomach Smooth Muscle	stomach
10	chr4:30725400-30727400	Active TSS	Fetal Kidney	kidney
11	chr4:30725400-30728200	Active TSS	Hela-S3	cervix
12	chr4:30725400-30728400	Active TSS	Rectal Smooth Muscle	rectum
13	chr4:30725600-30728200	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr4:30725600-30728400	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr4:30725600-30729400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:30726000-30727800	Active TSS	NH-A	brain
17	chr4:30726000-30728000	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr4:30726200-30727400	Active TSS	H1 Cell Line	embryonic stem cell
19	chr4:30726200-30727800	Active TSS	Fetal Lung	lung
20	chr4:30726200-30728000	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr4:30726200-30728200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:30726200-30728400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:30726200-30728400	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr4:30726200-30728400	Active TSS	Fetal Muscle Leg	muscle
25	chr4:30726200-30728400	Active TSS	HMEC	breast
26	chr4:30726200-30729000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:30726200-30729000	Active TSS	Aorta	Aorta
28	chr4:30726200-30729200	Active TSS	Fetal Stomach	stomach
29	chr4:30726200-30729200	Active TSS	NHEK	skin
30	chr4:30726200-30729400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr4:30726200-30729400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:30726200-30730000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr4:30726200-30732400	Weak transcription	Left Ventricle	heart
34	chr4:30726200-30738600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:30726400-30728000	Weak transcription	Brain Hippocampus Middle	brain
37	chr4:30726400-30728600	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr4:30726400-30729000	Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr4:30726600-30728000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:30726600-30728000	Weak transcription	Brain Anterior Caudate	brain
41	chr4:30726800-30727400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr4:30726800-30740800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr4:30727000-30727400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr4:30727000-30727400	Active TSS	Fetal Muscle Trunk	muscle
45	chr4:30727000-30727400	Active TSS	NHDF-Ad	bronchial
46	chr4:30727000-30727600	Enhancers	Muscle Satellite Cultured Cells	--
47	chr4:30727000-30727800	Weak transcription	Fetal Brain Female	brain
48	chr4:30727000-30728000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr4:30727200-30727400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr4:30727200-30727400	Active TSS	Brain Cingulate Gyrus	brain

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