Variant report

Variant	rs6448720
Chromosome Location	chr4:30741501-30741502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10006361	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10008728	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10021424	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10024115	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1032175	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1032176	0.90[EUR][1000 genomes]
rs10939312	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11727285	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13104581	0.90[EUR][1000 genomes]
rs13111136	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13121800	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13122380	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1348921	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1447364	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1486787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2121658	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28420079	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28716204	0.85[ASN][1000 genomes]
rs35428738	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3775331	0.91[EUR][1000 genomes]
rs4235010	0.82[ASN][1000 genomes]
rs4368569	0.82[ASN][1000 genomes]
rs4380480	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4466008	0.80[ASN][1000 genomes]
rs4498103	0.82[ASN][1000 genomes]
rs4505780	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4557224	0.83[ASN][1000 genomes]
rs4611883	0.82[ASN][1000 genomes]
rs4613528	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4615135	0.82[ASN][1000 genomes]
rs4995324	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6448719	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6448723	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6814666	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6815007	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6827723	0.82[ASN][1000 genomes]
rs6828872	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6832173	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6855232	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6855570	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6856144	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6858230	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7664926	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7670155	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7685283	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7685566	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7695188	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7695488	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9291547	0.83[EUR][1000 genomes]
rs9291548	0.88[EUR][1000 genomes]
rs9291549	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9291553	0.80[ASN][1000 genomes]
rs9999290	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:30728200-30745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:30728400-30746200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:30728600-30743000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:30729000-30748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:30729200-30741600	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:30729200-30746200	Weak transcription	NH-A	brain
8	chr4:30729400-30741600	Weak transcription	Brain Anterior Caudate	brain
9	chr4:30730200-30754800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:30732600-30746200	Weak transcription	NHEK	skin
11	chr4:30737200-30746000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:30737400-30746200	Weak transcription	Fetal Stomach	stomach
13	chr4:30737400-30748200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:30737400-30770800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:30737600-30744600	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:30737600-30745600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:30737800-30744400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:30738000-30745200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:30739400-30765000	Weak transcription	Fetal Lung	lung
20	chr4:30739800-30752000	Weak transcription	Aorta	Aorta
21	chr4:30741200-30741800	Enhancers	Fetal Heart	heart

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