Variant report

Variant	rs9997529
Chromosome Location	chr4:30901868-30901869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10000401	0.80[EUR][1000 genomes]
rs10012785	0.83[CHB][hapmap]
rs10013694	0.80[EUR][1000 genomes]
rs10027633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10517219	1.00[YRI][hapmap]
rs11722640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11735048	0.80[EUR][1000 genomes]
rs12512796	0.81[EUR][1000 genomes]
rs12651441	0.94[ASN][1000 genomes]
rs13138590	1.00[YRI][hapmap]
rs13139390	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13151051	0.80[EUR][1000 genomes]
rs1447365	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28670870	0.84[EUR][1000 genomes]
rs2871476	1.00[YRI][hapmap]
rs3775331	1.00[YRI][hapmap]
rs4075130	0.80[EUR][1000 genomes]
rs4235011	0.88[ASN][1000 genomes]
rs4235013	0.80[CEU][hapmap]
rs4235014	0.80[EUR][1000 genomes]
rs4235015	0.81[EUR][1000 genomes]
rs4259023	0.80[EUR][1000 genomes]
rs4260492	0.80[EUR][1000 genomes]
rs4261943	0.80[EUR][1000 genomes]
rs4266255	0.80[EUR][1000 genomes]
rs4337695	0.80[EUR][1000 genomes]
rs4358358	1.00[YRI][hapmap]
rs4361347	1.00[YRI][hapmap]
rs4368569	1.00[YRI][hapmap]
rs4441719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4466008	1.00[YRI][hapmap]
rs4469028	0.80[EUR][1000 genomes]
rs4487300	1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs4490422	0.86[CHB][hapmap]
rs4491979	0.81[EUR][1000 genomes]
rs4499665	0.87[CHB][hapmap]
rs4527444	0.88[ASN][1000 genomes]
rs4536889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4538442	0.86[CHB][hapmap]
rs4557225	0.80[EUR][1000 genomes]
rs4585258	1.00[YRI][hapmap]
rs4586889	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4611883	1.00[YRI][hapmap]
rs4692483	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4692485	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4692487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4692488	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4692489	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4692490	1.00[YRI][hapmap]
rs4692493	0.91[CHB][hapmap]
rs5001866	0.80[EUR][1000 genomes]
rs6448727	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6812005	1.00[YRI][hapmap]
rs6818938	0.86[CHB][hapmap]
rs6819406	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6821487	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6838322	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6839087	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6840698	0.80[EUR][1000 genomes]
rs6847642	1.00[YRI][hapmap]
rs7434610	0.87[ASN][1000 genomes]
rs7658077	0.80[EUR][1000 genomes]
rs7659873	0.86[CHB][hapmap]
rs7661924	0.80[EUR][1000 genomes]
rs7662881	0.80[EUR][1000 genomes]
rs7665348	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7669015	0.80[EUR][1000 genomes]
rs7673048	0.80[EUR][1000 genomes]
rs7678386	0.80[EUR][1000 genomes]
rs7679853	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7683848	0.80[EUR][1000 genomes]
rs7683968	0.81[EUR][1000 genomes]
rs7696462	0.80[EUR][1000 genomes]
rs9291553	1.00[YRI][hapmap]
rs9685207	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs9990832	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9996030	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9998569	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
2	chr4:30891600-30903400	Weak transcription	Fetal Kidney	kidney
3	chr4:30901400-30904600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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