Variant report

Variant	rs6448726
Chromosome Location	chr4:30860462-30860463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:30852819..30854530-chr4:30859220..30861561,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10000401	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10013694	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10805300	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10939317	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10939318	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11727594	0.81[EUR][1000 genomes]
rs11735048	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12512796	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13120686	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13127450	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13151051	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1447365	0.84[EUR][1000 genomes]
rs28670870	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2871476	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075130	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4235012	0.94[ASN][1000 genomes]
rs4235013	0.82[EUR][1000 genomes]
rs4235014	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4235015	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4259023	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4260492	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4261943	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4266255	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4337695	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4374588	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4380481	0.80[ASN][1000 genomes]
rs4469028	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4487300	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4491979	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4557225	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4585258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4692107	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4692490	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5001866	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6840698	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7658077	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7661924	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7662881	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7669015	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7673048	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7678386	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7683848	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7683968	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7696462	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9685207	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9999771	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30849200-30872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:30855200-30879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:30855600-30867400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:30855800-30862000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:30856200-30868600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:30857200-30868200	Weak transcription	Aorta	Aorta
7	chr4:30859400-30864200	Weak transcription	Fetal Lung	lung
8	chr4:30859800-30864200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:30860000-30860800	Enhancers	Colon Smooth Muscle	Colon
10	chr4:30860400-30860600	Enhancers	Fetal Heart	heart
11	chr4:30860400-30860800	Enhancers	HUES48 Cell Line	embryonic stem cell

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