Variant report

Variant	rs10021544
Chromosome Location	chr4:30998988-30998989
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10007906	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs10012294	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs10023743	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs10026905	0.81[ASN][1000 genomes]
rs10939325	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11735048	0.82[CEU][hapmap];0.81[CHD][hapmap]
rs13145109	0.85[CHB][hapmap]
rs2871476	0.82[CEU][hapmap];0.89[CHB][hapmap]
rs4075130	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs4132132	0.83[CHB][hapmap];0.90[CHD][hapmap];0.82[ASN][1000 genomes]
rs4235013	0.86[CEU][hapmap]
rs4235014	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs4261944	0.84[CHB][hapmap];0.90[CHD][hapmap];0.82[ASN][1000 genomes]
rs4358358	1.00[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[MEX][hapmap]
rs4361347	0.82[CEU][hapmap];0.95[CHB][hapmap]
rs4469028	0.82[CEU][hapmap];0.81[CHD][hapmap]
rs4487300	0.82[CEU][hapmap];0.89[CHB][hapmap]
rs4583721	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4585258	0.82[CEU][hapmap];0.89[CHB][hapmap]
rs4596205	0.84[CHB][hapmap]
rs4692109	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4692490	0.82[CEU][hapmap];0.89[CHB][hapmap]
rs4692497	0.84[CHB][hapmap];0.90[CHD][hapmap];0.82[ASN][1000 genomes]
rs5001866	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs6448730	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6448733	0.84[CHB][hapmap];0.89[CHD][hapmap]
rs6811926	0.83[CHB][hapmap];0.86[CHD][hapmap]
rs6816617	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs6832276	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs7658077	0.82[CEU][hapmap]
rs7667888	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs7669124	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs7696462	0.82[CEU][hapmap];0.84[CHB][hapmap];0.81[CHD][hapmap]
rs9685207	1.00[ASW][hapmap];0.82[CEU][hapmap];0.89[CHB][hapmap];0.81[CHD][hapmap];1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv878811	chr4:30987395-31019279	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30998000-31018000	Weak transcription	Aorta	Aorta
2	chr4:30998200-30999800	Weak transcription	Fetal Lung	lung

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