Variant report

Variant	rs10939325
Chromosome Location	chr4:30997909-30997910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10007906	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs10012294	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs10021544	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10023743	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs10026905	0.83[ASN][1000 genomes]
rs11735048	0.86[CEU][hapmap];0.81[CHD][hapmap]
rs13145109	0.85[CHB][hapmap]
rs13151051	0.80[CEU][hapmap]
rs2871476	0.86[CEU][hapmap];0.89[CHB][hapmap]
rs4075130	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs4132132	0.83[CHB][hapmap];0.90[CHD][hapmap];0.84[ASN][1000 genomes]
rs4235013	0.91[CEU][hapmap]
rs4235014	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs4261944	0.84[CHB][hapmap];0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs4358358	1.00[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[MEX][hapmap]
rs4361347	0.86[CEU][hapmap];0.95[CHB][hapmap]
rs4469028	0.86[CEU][hapmap];0.81[CHD][hapmap]
rs4487300	0.86[CEU][hapmap];0.89[CHB][hapmap]
rs4583721	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4585258	0.86[CEU][hapmap];0.89[CHB][hapmap]
rs4596205	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs4692109	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4692490	0.86[CEU][hapmap];0.89[CHB][hapmap]
rs4692497	0.84[CHB][hapmap];0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs5001866	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs6448730	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6448733	0.84[CHB][hapmap];0.89[CHD][hapmap];0.82[ASN][1000 genomes]
rs6811926	0.83[CHB][hapmap];0.86[CHD][hapmap];0.82[ASN][1000 genomes]
rs6816617	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs6832276	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs7658077	0.86[CEU][hapmap]
rs7667888	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs7669124	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs7696462	0.86[CEU][hapmap];0.84[CHB][hapmap];0.81[CHD][hapmap]
rs9685207	1.00[ASW][hapmap];0.86[CEU][hapmap];0.89[CHB][hapmap];0.81[CHD][hapmap];1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv878811	chr4:30987395-31019279	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30982000-30998400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:30997400-30998000	Enhancers	Aorta	Aorta
3	chr4:30997400-30998200	Strong transcription	Fetal Lung	lung
4	chr4:30997600-30998200	Weak transcription	Fetal Muscle Leg	muscle

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