Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:30912706..30915517-chr4:30915554..30917993,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10033947	0.92[ASN][1000 genomes]
rs10939316	0.87[ASN][1000 genomes]
rs11724560	0.87[ASN][1000 genomes]
rs11725675	0.87[ASN][1000 genomes]
rs11729893	0.87[ASN][1000 genomes]
rs11732590	0.87[ASN][1000 genomes]
rs11937102	0.82[AFR][1000 genomes]
rs11937211	0.87[ASN][1000 genomes]
rs11946614	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11947417	0.86[ASN][1000 genomes]
rs12650430	0.87[ASN][1000 genomes]
rs16884199	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35894739	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4324522	0.87[ASN][1000 genomes]
rs4508845	0.82[AFR][1000 genomes]
rs59783582	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6817713	0.90[ASN][1000 genomes]
rs6817736	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6825443	0.82[AFR][1000 genomes]
rs6825633	0.80[AFR][1000 genomes]
rs6833871	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839944	0.89[AFR][1000 genomes]
rs6843117	0.89[AFR][1000 genomes]
rs6856017	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6856304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214927	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30914200-30918000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:30914200-30918200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:30914200-30923800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:30914200-30947200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:30914400-30917600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:30914400-30918000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:30914400-30918000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:30914400-30918000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:30914400-30918000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:30914400-30918200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:30914400-30919400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:30914400-30928200	Weak transcription	Fetal Lung	lung
13	chr4:30914400-30940600	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:30917200-30918200	Weak transcription	Aorta	Aorta

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