Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:30852819..30854530-chr4:30859220..30861561,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10033947	0.99[ASN][1000 genomes]
rs10939316	0.91[ASN][1000 genomes]
rs11724560	0.91[ASN][1000 genomes]
rs11725675	0.91[ASN][1000 genomes]
rs11729893	0.91[ASN][1000 genomes]
rs11732590	0.91[ASN][1000 genomes]
rs11937211	0.91[ASN][1000 genomes]
rs11946614	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11947417	0.90[ASN][1000 genomes]
rs12650430	0.91[ASN][1000 genomes]
rs16884199	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4324522	0.91[ASN][1000 genomes]
rs59783582	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817713	0.88[ASN][1000 genomes]
rs6817736	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833871	0.93[ASN][1000 genomes]
rs6856017	0.92[ASN][1000 genomes]
rs6856304	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6856720	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73214927	0.88[ASN][1000 genomes]
rs7687267	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30849200-30872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:30855200-30879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:30855600-30867400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:30855800-30862000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:30856200-30868600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:30857200-30868200	Weak transcription	Aorta	Aorta
7	chr4:30859400-30864200	Weak transcription	Fetal Lung	lung
8	chr4:30859600-30860000	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:30859600-30860400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:30859600-30860400	Weak transcription	Fetal Heart	heart
11	chr4:30859800-30864200	Weak transcription	Rectal Smooth Muscle	rectum

Quick Search: