Variant report

Variant	rs59783582
Chromosome Location	chr4:30870172-30870173
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10033947	0.99[ASN][1000 genomes]
rs10939316	0.91[ASN][1000 genomes]
rs11724560	0.91[ASN][1000 genomes]
rs11725675	0.91[ASN][1000 genomes]
rs11729893	0.91[ASN][1000 genomes]
rs11732590	0.91[ASN][1000 genomes]
rs11937211	0.91[ASN][1000 genomes]
rs11946614	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11947417	0.90[ASN][1000 genomes]
rs12650430	0.91[ASN][1000 genomes]
rs16884199	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35894739	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4324522	0.91[ASN][1000 genomes]
rs6817713	0.88[ASN][1000 genomes]
rs6817736	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833871	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6856017	0.92[ASN][1000 genomes]
rs6856304	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6856720	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73214927	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30849200-30872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:30855200-30879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:30862800-30870600	Enhancers	Colon Smooth Muscle	Colon
4	chr4:30864800-30870800	Enhancers	Fetal Heart	heart
5	chr4:30865200-30870400	Weak transcription	Fetal Brain Male	brain
6	chr4:30865200-30872200	Weak transcription	Left Ventricle	heart
7	chr4:30867200-30870800	Enhancers	Fetal Lung	lung
8	chr4:30867400-30870800	Enhancers	Fetal Stomach	stomach
9	chr4:30868400-30870400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:30868800-30879200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:30868800-30886800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:30869000-30870200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:30869400-30870600	Weak transcription	Aorta	Aorta
14	chr4:30869400-30872400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:30869600-30870200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:30869800-30870200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr4:30870000-30870400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr4:30870000-30872200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:30870000-30872200	Weak transcription	NHEK	skin
20	chr4:30870000-30872400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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