Variant report

Variant	rs11939033
Chromosome Location	chr4:30896342-30896343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10517220	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs10939316	0.88[AFR][1000 genomes]
rs11721929	0.94[EUR][1000 genomes]
rs11722675	0.88[EUR][1000 genomes]
rs11722728	0.88[EUR][1000 genomes]
rs11724560	0.93[ASW][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11724608	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs11725568	0.88[EUR][1000 genomes]
rs11725675	0.88[AFR][1000 genomes]
rs11726296	0.83[EUR][1000 genomes]
rs11727832	0.95[EUR][1000 genomes]
rs11729893	0.94[AFR][1000 genomes]
rs11732061	0.94[EUR][1000 genomes]
rs11732391	1.00[JPT][hapmap]
rs11732590	0.88[AFR][1000 genomes]
rs11734204	0.94[EUR][1000 genomes]
rs11929796	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11934948	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs11935856	0.89[EUR][1000 genomes]
rs11937211	1.00[ASW][hapmap];0.87[GIH][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs11945622	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11947417	0.94[AFR][1000 genomes]
rs12648636	1.00[JPT][hapmap]
rs12650430	0.94[AFR][1000 genomes]
rs1447368	0.88[EUR][1000 genomes]
rs17718569	1.00[JPT][hapmap]
rs17719504	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs28884596	0.85[EUR][1000 genomes]
rs4324522	0.88[AFR][1000 genomes]
rs6813421	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6817713	1.00[ASW][hapmap];0.87[GIH][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs6817721	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6818328	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6825940	0.92[CEU][hapmap]
rs6833448	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs6837246	1.00[JPT][hapmap]
rs6839018	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73214903	0.88[EUR][1000 genomes]
rs73214904	0.88[EUR][1000 genomes]
rs73214906	0.88[EUR][1000 genomes]
rs73214908	0.86[EUR][1000 genomes]
rs73214909	0.88[EUR][1000 genomes]
rs73214912	0.88[EUR][1000 genomes]
rs73214917	0.83[EUR][1000 genomes]
rs73214918	0.88[EUR][1000 genomes]
rs73214925	0.89[EUR][1000 genomes]
rs73214927	0.88[AFR][1000 genomes]
rs73214928	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73214930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73214938	0.94[EUR][1000 genomes]
rs73214944	0.91[EUR][1000 genomes]
rs73214947	0.94[EUR][1000 genomes]
rs73214950	0.94[EUR][1000 genomes]
rs73214953	0.94[EUR][1000 genomes]
rs73812667	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7439866	1.00[ASW][hapmap];0.87[GIH][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs7670614	1.00[JPT][hapmap]
rs7676204	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
2	chr4:30883200-30899000	Weak transcription	Aorta	Aorta
3	chr4:30891600-30903400	Weak transcription	Fetal Kidney	kidney
4	chr4:30896000-30899400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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