Variant report

Variant	rs6825940
Chromosome Location	chr4:30864710-30864711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10517220	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11721929	0.84[AMR][1000 genomes]
rs11722675	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11722728	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11724608	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725568	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11725605	0.83[AMR][1000 genomes]
rs11726296	0.89[AMR][1000 genomes]
rs11727832	0.83[EUR][1000 genomes]
rs11934948	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11935856	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11939033	0.92[CEU][hapmap]
rs11945622	0.90[CEU][hapmap]
rs1447368	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17719504	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28393067	0.85[AMR][1000 genomes]
rs28884596	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6817721	0.92[CEU][hapmap]
rs6833448	0.92[CEU][hapmap];0.89[AMR][1000 genomes]
rs73213198	0.87[EUR][1000 genomes]
rs73213200	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73214903	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73214904	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73214906	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73214908	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73214909	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73214912	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73214917	0.89[AMR][1000 genomes]
rs73214918	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73214925	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73214928	0.83[EUR][1000 genomes]
rs73214938	0.89[AMR][1000 genomes]
rs73214944	0.84[AMR][1000 genomes]
rs73214950	0.84[AMR][1000 genomes]
rs73214953	0.89[AMR][1000 genomes]
rs7676204	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30849200-30872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:30855200-30879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:30855600-30867400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:30856200-30868600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:30857200-30868200	Weak transcription	Aorta	Aorta
6	chr4:30860600-30864800	Weak transcription	Fetal Heart	heart
7	chr4:30861800-30868000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:30862600-30867400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:30862800-30870600	Enhancers	Colon Smooth Muscle	Colon
10	chr4:30863000-30868800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:30863200-30867800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:30863600-30868600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:30864000-30865200	Enhancers	Fetal Brain Male	brain
14	chr4:30864200-30865400	Enhancers	NHEK	skin
15	chr4:30864200-30865600	Enhancers	HUVEC	blood vessel
16	chr4:30864200-30865800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:30864200-30865800	Enhancers	Fetal Lung	lung
18	chr4:30864200-30870000	Enhancers	Rectal Smooth Muscle	rectum
19	chr4:30864400-30866400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:30864400-30868000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:30864600-30865600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:30864600-30865600	Enhancers	HMEC	breast
23	chr4:30864600-30865600	Enhancers	NH-A	brain
24	chr4:30864600-30866200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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