Variant report

Variant	rs11724608
Chromosome Location	chr4:30830285-30830286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10517220	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11721929	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11722675	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11722728	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11725568	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11726296	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11727832	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11732061	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11732391	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs11734204	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11929796	0.91[EUR][1000 genomes]
rs11934948	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11935856	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11939033	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs11945622	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1447368	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17718569	1.00[YRI][hapmap]
rs17719504	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28393067	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28884596	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6813421	0.83[EUR][1000 genomes]
rs6817721	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs6818328	0.85[EUR][1000 genomes]
rs6825940	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833448	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6837246	1.00[YRI][hapmap]
rs6839018	0.83[EUR][1000 genomes]
rs73213200	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73214903	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73214904	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73214906	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73214908	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73214909	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73214912	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73214917	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73214918	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73214925	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73214928	0.89[EUR][1000 genomes]
rs73214930	0.85[EUR][1000 genomes]
rs73214938	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73214944	0.89[AMR][1000 genomes]
rs73214947	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73214950	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73214953	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73812667	0.83[EUR][1000 genomes]
rs7670614	1.00[YRI][hapmap]
rs7676204	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:30825200-30835800	Weak transcription	Aorta	Aorta
3	chr4:30826400-30830400	Weak transcription	Fetal Heart	heart
4	chr4:30827200-30832000	Weak transcription	HUVEC	blood vessel
5	chr4:30827200-30833400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:30827400-30830400	Weak transcription	Hela-S3	cervix
7	chr4:30829000-30830800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:30829400-30830600	Enhancers	NH-A	brain
9	chr4:30829600-30830400	Enhancers	HSMM	muscle
10	chr4:30830200-30838400	Weak transcription	Fetal Stomach	stomach

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