Variant report

Variant	rs73214944
Chromosome Location	chr4:30920562-30920563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10517220	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11721929	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11722675	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11722728	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11724608	0.89[AMR][1000 genomes]
rs11725568	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11726296	0.84[AMR][1000 genomes]
rs11727832	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11732061	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11734204	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11934948	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11935856	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11939033	0.91[EUR][1000 genomes]
rs11945622	0.91[EUR][1000 genomes]
rs1447368	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17719504	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28393067	0.80[AMR][1000 genomes]
rs28884596	0.80[AMR][1000 genomes]
rs6813421	0.92[EUR][1000 genomes]
rs6817721	0.91[EUR][1000 genomes]
rs6818328	0.91[EUR][1000 genomes]
rs6825940	0.84[AMR][1000 genomes]
rs6833448	0.84[AMR][1000 genomes]
rs6839018	0.92[EUR][1000 genomes]
rs73214903	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73214904	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73214906	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73214908	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73214909	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73214912	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73214917	0.84[AMR][1000 genomes]
rs73214918	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73214925	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73214928	0.89[EUR][1000 genomes]
rs73214930	0.91[EUR][1000 genomes]
rs73214938	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73214947	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73214950	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73214953	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73812667	0.92[EUR][1000 genomes]
rs7676204	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30914200-30923800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:30914200-30947200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:30914400-30928200	Weak transcription	Fetal Lung	lung
4	chr4:30914400-30940600	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:30917600-30922400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:30918600-30921600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:30918600-30921800	Weak transcription	Aorta	Aorta
8	chr4:30918600-30922000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:30918600-30925800	Weak transcription	Fetal Intestine Small	intestine
10	chr4:30919400-30920600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:30919400-30926200	Weak transcription	Left Ventricle	heart
12	chr4:30919600-30922400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:30920000-30922400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr4:30920000-30922400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr4:30920200-30922200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:30920400-30922200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:30920400-30922600	Enhancers	HUES48 Cell Line	embryonic stem cell

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