Variant report

Variant	rs28884596
Chromosome Location	chr4:30831765-30831766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10517220	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721929	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11722675	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722728	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11724608	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11725568	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726296	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727832	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11732061	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11734204	0.82[EUR][1000 genomes]
rs11929796	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934948	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935856	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939033	0.85[EUR][1000 genomes]
rs11945622	0.85[EUR][1000 genomes]
rs1447368	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17718569	0.83[ASN][1000 genomes]
rs17719504	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393067	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813421	0.83[EUR][1000 genomes]
rs6817721	0.85[EUR][1000 genomes]
rs6818328	0.85[EUR][1000 genomes]
rs6825940	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6833448	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837246	0.83[ASN][1000 genomes]
rs6839018	0.83[EUR][1000 genomes]
rs73213200	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73214903	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214904	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214906	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214908	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214909	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214912	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214917	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214918	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214925	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73214928	0.89[EUR][1000 genomes]
rs73214930	0.85[EUR][1000 genomes]
rs73214938	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73214944	0.80[AMR][1000 genomes]
rs73214947	0.82[EUR][1000 genomes]
rs73214950	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73214953	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73812667	0.83[EUR][1000 genomes]
rs7670614	0.83[ASN][1000 genomes]
rs7676204	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:30825200-30835800	Weak transcription	Aorta	Aorta
3	chr4:30827200-30832000	Weak transcription	HUVEC	blood vessel
4	chr4:30827200-30833400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:30830200-30838400	Weak transcription	Fetal Stomach	stomach
6	chr4:30830400-30831800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:30830600-30837800	Weak transcription	NH-A	brain
8	chr4:30830800-30838400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:30831400-30832200	Weak transcription	Fetal Heart	heart

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