Variant report

Variant	rs73213200
Chromosome Location	chr4:30834575-30834576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10517220	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11722675	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11722728	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11724608	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11725568	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11726296	0.84[AMR][1000 genomes]
rs11727832	0.81[EUR][1000 genomes]
rs11729676	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11934948	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11935856	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1447368	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17719504	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28393067	0.80[AMR][1000 genomes]
rs28884596	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6825940	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6833448	0.84[AMR][1000 genomes]
rs73213198	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73214903	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73214904	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73214906	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73214908	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73214909	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73214912	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73214917	0.84[AMR][1000 genomes]
rs73214918	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73214925	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73214928	0.81[EUR][1000 genomes]
rs73214938	0.83[AMR][1000 genomes]
rs73214951	1.00[AFR][1000 genomes]
rs73214953	0.83[AMR][1000 genomes]
rs7676204	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:30825200-30835800	Weak transcription	Aorta	Aorta
3	chr4:30830200-30838400	Weak transcription	Fetal Stomach	stomach
4	chr4:30830600-30837800	Weak transcription	NH-A	brain
5	chr4:30830800-30838400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:30832400-30834600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:30833400-30842800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:30834400-30834600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:30834400-30834600	Enhancers	Fetal Heart	heart
10	chr4:30834400-30834600	Enhancers	Right Ventricle	heart
11	chr4:30834400-30834800	Weak transcription	Stomach Smooth Muscle	stomach

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