Variant report

Variant	rs7676204
Chromosome Location	chr4:30856775-30856776
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10517220	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721929	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11722675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11724608	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11725568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726296	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727832	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11732061	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11732391	1.00[JPT][hapmap]
rs11734204	0.85[EUR][1000 genomes]
rs11929796	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934948	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935856	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939033	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs11945622	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12648636	1.00[JPT][hapmap]
rs1447368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17718569	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17719504	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393067	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28884596	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813421	0.86[EUR][1000 genomes]
rs6817721	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs6818328	0.88[EUR][1000 genomes]
rs6825940	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6833448	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837246	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6839018	0.86[EUR][1000 genomes]
rs73213200	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73214903	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214904	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214906	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214908	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214909	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214917	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214925	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73214928	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73214930	0.88[EUR][1000 genomes]
rs73214938	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73214944	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73214947	0.85[EUR][1000 genomes]
rs73214950	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73214953	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73812667	0.86[EUR][1000 genomes]
rs7670614	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30849200-30872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:30851000-30857800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:30852000-30858800	Weak transcription	Fetal Heart	heart
4	chr4:30855200-30879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:30855600-30856800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:30855600-30867400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:30855800-30862000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:30856200-30868600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:30856400-30857000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:30856400-30857200	Enhancers	Aorta	Aorta
11	chr4:30856400-30858600	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:30856600-30856800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:30856600-30856800	Enhancers	Left Ventricle	heart

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