Variant report

Variant	rs6837246
Chromosome Location	chr4:30821035-30821036
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10517220	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11722675	0.83[ASN][1000 genomes]
rs11724608	1.00[YRI][hapmap]
rs11725568	0.83[ASN][1000 genomes]
rs11726296	0.83[ASN][1000 genomes]
rs11732391	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11929796	0.83[ASN][1000 genomes]
rs11934948	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11935856	0.83[ASN][1000 genomes]
rs11939033	1.00[JPT][hapmap]
rs12648636	1.00[JPT][hapmap]
rs1447368	0.83[ASN][1000 genomes]
rs17718569	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17719504	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs28393067	0.83[ASN][1000 genomes]
rs28884596	0.83[ASN][1000 genomes]
rs6817721	1.00[JPT][hapmap]
rs6822389	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6833448	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs73213191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73214903	0.83[ASN][1000 genomes]
rs73214904	0.83[ASN][1000 genomes]
rs73214906	0.83[ASN][1000 genomes]
rs73214908	0.83[ASN][1000 genomes]
rs73214909	0.83[ASN][1000 genomes]
rs73214912	0.83[ASN][1000 genomes]
rs73214917	0.83[ASN][1000 genomes]
rs73214918	0.83[ASN][1000 genomes]
rs7670614	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676204	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv499039	chr4:30819213-30830142	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30795800-30824000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:30817600-30824000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:30818000-30823000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:30818600-30823600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:30819000-30821600	Enhancers	Fetal Heart	heart
7	chr4:30819600-30821600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:30819800-30821400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:30820000-30821800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:30820400-30821200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr4:30820400-30824600	Weak transcription	Aorta	Aorta
12	chr4:30820800-30823400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:30821000-30821200	Enhancers	Fetal Lung	lung
14	chr4:30821000-30821600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:30821000-30823000	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links