Variant report

Variant	rs17718569
Chromosome Location	chr4:30826723-30826724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10517220	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11722675	0.83[ASN][1000 genomes]
rs11724608	1.00[YRI][hapmap]
rs11725568	0.83[ASN][1000 genomes]
rs11726296	0.83[ASN][1000 genomes]
rs11732391	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11929796	0.83[ASN][1000 genomes]
rs11934948	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11935856	0.83[ASN][1000 genomes]
rs11939033	1.00[JPT][hapmap]
rs12648636	1.00[JPT][hapmap]
rs1447368	0.83[ASN][1000 genomes]
rs17719504	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs28393067	0.83[ASN][1000 genomes]
rs28884596	0.83[ASN][1000 genomes]
rs6817721	1.00[JPT][hapmap]
rs6822389	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6833448	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6837246	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73214903	0.83[ASN][1000 genomes]
rs73214904	0.83[ASN][1000 genomes]
rs73214906	0.83[ASN][1000 genomes]
rs73214908	0.83[ASN][1000 genomes]
rs73214909	0.83[ASN][1000 genomes]
rs73214912	0.83[ASN][1000 genomes]
rs73214917	0.83[ASN][1000 genomes]
rs73214918	0.83[ASN][1000 genomes]
rs7670614	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676204	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv499039	chr4:30819213-30830142	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:30823800-30827000	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:30824200-30826800	Weak transcription	HSMM	muscle
4	chr4:30825200-30826800	Weak transcription	Hela-S3	cervix
5	chr4:30825200-30835800	Weak transcription	Aorta	Aorta
6	chr4:30826200-30827200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:30826400-30827200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:30826400-30827200	Enhancers	NH-A	brain
9	chr4:30826400-30830400	Weak transcription	Fetal Heart	heart
10	chr4:30826600-30827000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:30826600-30827200	Enhancers	HUVEC	blood vessel

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