Variant report

Variant	rs11929796
Chromosome Location	chr4:30875185-30875186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10517220	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722675	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722728	0.94[EUR][1000 genomes]
rs11724608	0.91[EUR][1000 genomes]
rs11725568	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726296	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727832	0.86[EUR][1000 genomes]
rs11934948	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935856	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939033	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11945622	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1447368	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17718569	0.83[ASN][1000 genomes]
rs17719504	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393067	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28884596	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813421	0.80[EUR][1000 genomes]
rs6817721	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6818328	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6833448	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837246	0.83[ASN][1000 genomes]
rs6839018	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73214903	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214904	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214906	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214908	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214909	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214912	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214917	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214918	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214925	0.92[EUR][1000 genomes]
rs73214928	0.86[EUR][1000 genomes]
rs73214930	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73812667	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7670614	0.83[ASN][1000 genomes]
rs7676204	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30855200-30879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:30868800-30879200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:30868800-30886800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:30870200-30879400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
6	chr4:30873000-30876800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:30873000-30877000	Weak transcription	Fetal Heart	heart
8	chr4:30873000-30877600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:30873200-30877400	Weak transcription	NHEK	skin
10	chr4:30873200-30879600	Weak transcription	Aorta	Aorta

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