Variant report

Variant	rs11727832
Chromosome Location	chr4:30889581-30889582
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:30889421-30889611	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000250624	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10517220	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11721929	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11722675	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11722728	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11724608	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11725568	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11726296	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11732061	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11734204	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11929796	0.86[EUR][1000 genomes]
rs11934948	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11935856	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11939033	0.95[EUR][1000 genomes]
rs11945622	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1447368	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17719504	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28393067	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28884596	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6813421	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6817721	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6818328	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6825940	0.83[EUR][1000 genomes]
rs6833448	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6839018	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73213200	0.81[EUR][1000 genomes]
rs73214903	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73214904	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73214906	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73214908	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73214909	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73214912	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73214917	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73214918	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73214925	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73214928	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73214930	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73214938	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73214944	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73214947	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73214950	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73214953	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73812667	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7676204	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
2	chr4:30879800-30893000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:30883200-30899000	Weak transcription	Aorta	Aorta
4	chr4:30886600-30889600	Weak transcription	Fetal Heart	heart

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