Variant report

Variant	rs6839018
Chromosome Location	chr4:30900480-30900481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10517220	0.86[EUR][1000 genomes]
rs11721929	0.95[EUR][1000 genomes]
rs11722675	0.86[EUR][1000 genomes]
rs11722728	0.86[EUR][1000 genomes]
rs11724608	0.83[EUR][1000 genomes]
rs11725568	0.86[EUR][1000 genomes]
rs11726296	0.81[EUR][1000 genomes]
rs11727832	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11729893	0.86[AFR][1000 genomes]
rs11732061	0.95[EUR][1000 genomes]
rs11734204	0.95[EUR][1000 genomes]
rs11929796	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11934948	0.86[EUR][1000 genomes]
rs11935856	0.88[EUR][1000 genomes]
rs11937211	0.86[AFR][1000 genomes]
rs11939033	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11945622	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947417	0.86[AFR][1000 genomes]
rs12650430	0.86[AFR][1000 genomes]
rs1447368	0.86[EUR][1000 genomes]
rs17719504	0.86[EUR][1000 genomes]
rs28884596	0.83[EUR][1000 genomes]
rs6813421	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817713	0.88[AFR][1000 genomes]
rs6817721	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6818328	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833448	0.81[EUR][1000 genomes]
rs73214903	0.86[EUR][1000 genomes]
rs73214904	0.86[EUR][1000 genomes]
rs73214906	0.86[EUR][1000 genomes]
rs73214908	0.85[EUR][1000 genomes]
rs73214909	0.86[EUR][1000 genomes]
rs73214912	0.86[EUR][1000 genomes]
rs73214917	0.81[EUR][1000 genomes]
rs73214918	0.86[EUR][1000 genomes]
rs73214925	0.88[EUR][1000 genomes]
rs73214928	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214930	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214938	0.95[EUR][1000 genomes]
rs73214944	0.92[EUR][1000 genomes]
rs73214947	0.95[EUR][1000 genomes]
rs73214950	0.95[EUR][1000 genomes]
rs73214953	0.95[EUR][1000 genomes]
rs73812667	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676204	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
2	chr4:30891600-30903400	Weak transcription	Fetal Kidney	kidney

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