Variant report

Variant	rs11729676
Chromosome Location	chr4:30939956-30939957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11725605	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73213200	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73214951	1.00[AFR][1000 genomes]
rs73214958	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30914200-30947200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:30914400-30940600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:30920600-30947400	Weak transcription	Fetal Stomach	stomach
4	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
5	chr4:30932800-30940600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:30935200-30947400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:30938200-30945800	Enhancers	Fetal Intestine Small	intestine
8	chr4:30938400-30941800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:30939000-30941800	Enhancers	NHEK	skin
10	chr4:30939200-30941600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:30939400-30941600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr4:30939400-30941600	Enhancers	HMEC	breast
13	chr4:30939600-30941600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:30939600-30945000	Enhancers	Fetal Intestine Large	intestine
15	chr4:30939800-30940000	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr4:30939800-30940800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:30939800-30941400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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