Variant report

Variant	rs16884361
Chromosome Location	chr4:31115901-31115902
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11931806	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11937565	1.00[CEU][hapmap]
rs11945187	1.00[CEU][hapmap]
rs12507539	1.00[CEU][hapmap]
rs13133529	1.00[CEU][hapmap]
rs13138590	0.82[CEU][hapmap]
rs13151017	1.00[CEU][hapmap]
rs1532561	1.00[CEU][hapmap]
rs16867997	1.00[CEU][hapmap]
rs16884372	1.00[CEU][hapmap]
rs16884388	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31106200-31116200	Weak transcription	Brain Germinal Matrix	brain
2	chr4:31106200-31116200	Weak transcription	Fetal Brain Male	brain
3	chr4:31109200-31116600	Weak transcription	Aorta	Aorta
4	chr4:31109400-31116200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:31114200-31116200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr4:31114600-31116000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:31114600-31116200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:31114600-31116200	Weak transcription	Fetal Heart	heart
9	chr4:31115200-31116800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:31115800-31116000	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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