Variant report

Variant	rs16867997
Chromosome Location	chr4:31131067-31131068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11937565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13133529	1.00[CEU][hapmap]
rs13151017	1.00[CEU][hapmap]
rs1532561	1.00[CEU][hapmap]
rs16867994	0.91[ASW][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs16884361	1.00[CEU][hapmap]
rs16884372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884382	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs16884388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884426	0.90[EUR][1000 genomes]
rs28571701	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56271018	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60159418	0.84[EUR][1000 genomes]
rs61794131	0.85[EUR][1000 genomes]
rs61794133	0.81[EUR][1000 genomes]
rs61794134	0.85[EUR][1000 genomes]
rs61794135	0.85[EUR][1000 genomes]
rs61794136	0.90[EUR][1000 genomes]
rs61794138	0.90[EUR][1000 genomes]
rs61794141	0.90[EUR][1000 genomes]
rs61794142	0.90[EUR][1000 genomes]
rs61794143	0.90[EUR][1000 genomes]
rs61794144	0.90[EUR][1000 genomes]
rs61794145	0.90[EUR][1000 genomes]
rs61794146	0.90[EUR][1000 genomes]
rs61794147	0.90[EUR][1000 genomes]
rs61794148	0.90[EUR][1000 genomes]
rs61794149	0.90[EUR][1000 genomes]
rs61795382	0.90[EUR][1000 genomes]
rs61795383	0.85[EUR][1000 genomes]
rs61795384	0.90[EUR][1000 genomes]
rs61795385	0.90[EUR][1000 genomes]
rs61795386	0.90[EUR][1000 genomes]
rs61795387	0.90[EUR][1000 genomes]
rs61795388	0.90[EUR][1000 genomes]
rs61795390	0.81[EUR][1000 genomes]
rs61795391	0.81[EUR][1000 genomes]
rs61795392	0.81[EUR][1000 genomes]
rs61795393	0.81[EUR][1000 genomes]
rs7671046	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31116800-31144000	Weak transcription	Aorta	Aorta
2	chr4:31127600-31135000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:31128000-31132600	Weak transcription	Left Ventricle	heart
4	chr4:31130800-31131400	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links