Variant report

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10498897	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12525934	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526276	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12527759	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12529992	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884957	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16885073	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885084	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885099	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885100	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885104	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35883174	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73453963	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73453972	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73453977	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75243600-75244600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:75243600-75245800	Enhancers	Hela-S3	cervix
3	chr6:75243600-75246000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:75243600-75246200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:75243800-75244400	Enhancers	Stomach Mucosa	stomach
6	chr6:75243800-75244800	Enhancers	Small Intestine	intestine
7	chr6:75243800-75245000	Enhancers	Fetal Intestine Small	intestine
8	chr6:75243800-75245000	Enhancers	Fetal Kidney	kidney
9	chr6:75243800-75245000	Enhancers	NHLF	lung
10	chr6:75243800-75246000	Enhancers	Fetal Intestine Large	intestine
11	chr6:75244000-75244400	Enhancers	HepG2	liver
12	chr6:75244000-75245000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:75244000-75245000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr6:75244000-75245000	Enhancers	Osteobl	bone
15	chr6:75244200-75244600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:75244200-75244800	Active TSS	A549	lung
17	chr6:75244200-75245000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:75244200-75245000	Enhancers	Adipose Nuclei	Adipose
19	chr6:75244200-75245000	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr6:75244200-75245200	Enhancers	Liver	Liver
21	chr6:75244200-75246000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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