Variant report

Variant	rs16885898
Chromosome Location	chr6:54586908-54586909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54585487..54587893-chr6:54738565..54741108,3	MCF-7	breast:
2	chr6:54584974..54587110-chr6:54788503..54790985,2	MCF-7	breast:
3	chr6:54561293..54570100-chr6:54582505..54590247,14	MCF-7	breast:
4	chr6:54580831..54596896-chr6:54704751..54716103,89	MCF-7	breast:
5	chr6:54585837..54588493-chr6:54594744..54597239,2	MCF-7	breast:
6	chr6:54577593..54590845-chr6:54708062..54715554,67	MCF-7	breast:
7	chr6:54586807..54589626-chr6:54590506..54593407,2	MCF-7	breast:
8	chr6:54585158..54588149-chr6:54741239..54743201,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16885860	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56762989	1.00[AMR][1000 genomes]
rs61162376	1.00[AMR][1000 genomes]
rs62414312	0.93[AFR][1000 genomes]
rs6909009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909061	1.00[AMR][1000 genomes]
rs6933826	1.00[AMR][1000 genomes]
rs73743467	1.00[AMR][1000 genomes]
rs7758802	1.00[AMR][1000 genomes]
rs7776195	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54583600-54594200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:54585200-54587200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:54586400-54587200	Enhancers	HMEC	breast
4	chr6:54586600-54587200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:54586600-54587400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:54586600-54587400	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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