Variant report

Variant	rs62414312
Chromosome Location	chr6:54571168-54571169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1507108	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16885860	0.90[AFR][1000 genomes]
rs16885880	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16885898	0.93[AFR][1000 genomes]
rs2174144	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57404514	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60228786	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62414271	1.00[EUR][1000 genomes]
rs62414315	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62414316	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62414318	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62414319	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62414351	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62414352	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62414354	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6909009	0.93[AFR][1000 genomes]
rs7757553	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54564400-54575200	Weak transcription	Fetal Lung	lung
2	chr6:54565400-54575400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:54570000-54571400	Enhancers	Fetal Intestine Small	intestine
4	chr6:54570800-54571200	Enhancers	Stomach Mucosa	stomach
5	chr6:54570800-54572400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:54570800-54572600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:54570800-54572600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:54571000-54571200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:54571000-54572200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:54571000-54572400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr6:54571000-54572600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:54571000-54572600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:54571000-54573200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:54571000-54573400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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