Variant report

Variant	rs2174144
Chromosome Location	chr6:54566688-54566689
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54563782..54566701-chr6:54762502..54764565,2	MCF-7	breast:
2	chr6:54564442..54567295-chr6:54579442..54581907,3	MCF-7	breast:
3	chr6:54564646..54566812-chr6:54747166..54750251,3	MCF-7	breast:
4	chr6:54559522..54567174-chr6:54707552..54714330,37	MCF-7	breast:
5	chr6:54564726..54568882-chr6:54587061..54590275,4	MCF-7	breast:
6	chr6:54561293..54570100-chr6:54582505..54590247,14	MCF-7	breast:
7	chr6:54566597..54568164-chr6:54572214..54574120,2	MCF-7	breast:
8	chr6:54559803..54567776-chr6:54579525..54585377,11	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12664791	1.00[CEU][hapmap]
rs1507108	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16885880	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17682328	1.00[CEU][hapmap]
rs17682340	1.00[CEU][hapmap]
rs57404514	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60228786	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62414271	1.00[EUR][1000 genomes]
rs62414312	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62414315	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62414316	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62414318	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62414319	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62414351	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62414352	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62414354	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7757553	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9474936	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54564200-54571000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:54564400-54570800	Weak transcription	Stomach Mucosa	stomach
3	chr6:54564400-54575200	Weak transcription	Fetal Lung	lung
4	chr6:54565400-54575400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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