Variant report

Variant	rs7757553
Chromosome Location	chr6:54582761-54582762
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54574954..54578587-chr6:54580352..54583856,5	MCF-7	breast:
2	chr6:54578251..54580318-chr6:54581650..54584206,2	MCF-7	breast:
3	chr6:54568299..54570747-chr6:54582453..54584898,3	MCF-7	breast:
4	chr6:54581649..54583716-chr6:54731091..54732634,2	MCF-7	breast:
5	chr6:54561293..54570100-chr6:54582505..54590247,14	MCF-7	breast:
6	chr6:54580831..54596896-chr6:54704751..54716103,89	MCF-7	breast:
7	chr6:54579097..54581073-chr6:54581334..54583325,2	MCF-7	breast:
8	chr6:54582146..54584053-chr6:54741073..54743084,2	MCF-7	breast:
9	chr6:54582065..54584949-chr6:54722187..54724387,3	MCF-7	breast:
10	chr6:54577593..54590845-chr6:54708062..54715554,67	MCF-7	breast:
11	chr6:54581970..54584648-chr6:54584800..54586441,2	MCF-7	breast:
12	chr6:54582003..54585202-chr6:54737626..54739872,3	MCF-7	breast:
13	chr6:54582713..54585752-chr6:54741876..54745709,4	MCF-7	breast:
14	chr6:54582733..54583294-chr6:54934014..54934701,2	MCF-7	breast:
15	chr6:54559803..54567776-chr6:54579525..54585377,11	MCF-7	breast:
16	chr6:54582596..54584566-chr6:55092481..55094780,2	MCF-7	breast:
17	chr6:54581587..54585941-chr6:54586924..54591451,7	MCF-7	breast:
18	chr6:54570566..54573467-chr6:54582462..54585489,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12664791	1.00[CEU][hapmap]
rs1507108	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16885880	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17682328	1.00[CEU][hapmap]
rs17682340	1.00[CEU][hapmap]
rs2174144	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57404514	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60228786	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62414271	0.95[EUR][1000 genomes]
rs62414312	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62414315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62414316	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62414318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62414319	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62414351	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62414352	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62414354	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9474936	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54580000-54583000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:54581200-54583000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:54581200-54583000	Weak transcription	Fetal Intestine Large	intestine
4	chr6:54582200-54583200	Weak transcription	Fetal Stomach	stomach
5	chr6:54582400-54583000	Enhancers	Fetal Intestine Small	intestine
6	chr6:54582400-54583800	Enhancers	NHEK	skin
7	chr6:54582400-54585000	Enhancers	Fetal Lung	lung
8	chr6:54582600-54583000	Enhancers	Fetal Kidney	kidney
9	chr6:54582600-54583000	Weak transcription	HMEC	breast
10	chr6:54582600-54583800	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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