Variant report
| Variant | rs1688603 |
|---|---|
| Chromosome Location | chr7:98055021-98055022 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:98054603..98056249-chr7:98438338..98440973,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10155846 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10156068 | 0.92[ASN][1000 genomes] |
| rs10953264 | 1.00[AMR][1000 genomes] |
| rs1635607 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1635608 | 0.92[ASN][1000 genomes] |
| rs1688602 | 1.00[ASN][1000 genomes] |
| rs1688608 | 1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4729439 | 0.92[ASN][1000 genomes] |
| rs4729441 | 1.00[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4729442 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs56726472 | 1.00[EUR][1000 genomes] |
| rs58801419 | 1.00[EUR][1000 genomes] |
| rs6465684 | 0.92[ASN][1000 genomes] |
| rs6957281 | 0.92[ASN][1000 genomes] |
| rs7777035 | 0.84[AFR][1000 genomes] |
| rs7795369 | 1.00[ASN][1000 genomes] |
| rs7795519 | 1.00[ASN][1000 genomes] |
| rs7799755 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7800468 | 0.92[ASN][1000 genomes] |
| rs9771092 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1031371 | chr7:97312452-98070538 | Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
| 2 | nsv831067 | chr7:97860169-98065528 | Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv888766 | chr7:97975542-98123880 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv607919 | chr7:98021211-98124854 | Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| 5 | nsv539034 | chr7:98029119-98106260 | Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:98051000-98069000 | Weak transcription | Liver | Liver |
