Variant report

Variant	rs4729442
Chromosome Location	chr7:98067259-98067260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10155846	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10156068	1.00[ASN][1000 genomes]
rs1635607	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1635608	1.00[ASN][1000 genomes]
rs1688602	0.92[ASN][1000 genomes]
rs1688603	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1688608	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4729439	1.00[ASN][1000 genomes]
rs4729441	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs56726472	1.00[EUR][1000 genomes]
rs58801419	1.00[EUR][1000 genomes]
rs6465684	1.00[ASN][1000 genomes]
rs6465685	0.85[ASN][1000 genomes]
rs6957281	1.00[ASN][1000 genomes]
rs7795369	0.92[ASN][1000 genomes]
rs7795519	0.92[ASN][1000 genomes]
rs7796340	0.85[ASN][1000 genomes]
rs7799755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7800468	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv888766	chr7:97975542-98123880	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
3	nsv607919	chr7:98021211-98124854	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv539034	chr7:98029119-98106260	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98051000-98069000	Weak transcription	Liver	Liver
2	chr7:98064200-98069600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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